Analysis of synchronous transitions of two traits — synchronous_transitions • phyloAMR

Synchronous gain and loss of two traits at a spot on tree

Usage

synchronous_transitions(
  comparitor_parent_child_df,
  trait_parent_child_df,
  node_states = "joint",
  confidence = NULL
)

Arguments

comparitor_parent_child_df: Parent child dataset for a comparitor trait, such as a genotype or a different trait/phenotype
trait_parent_child_df: Parent child dataset for a trait of interest, such as a trait/phenotype
node_states: Joint or marginal reconstruction
confidence: Whether to use high or low confidence transition nodes when node_states are marginal

Value

Synchronous gain and loss events of two traits